Like any opinionated adult, I'm drawn to gender bias discussions like a moth to a flame. 
Both  are carefully reasoned articles. Both attempt to dissect the issues  surrounding gender bias in science. I have a left wing knee jerk liberal  bias against anything that comes out of the AEI and a corresponding pro  bias against anything a Nobel Prize Laureate has to say. The AEI  article has been represented as anti-women and the Current Biology  article as pro-women. What's interesting to me is how similar both  articles are.
Both articles make the assertion that top  drawer science is an obsessive occupation, often consuming personal  resources that would otherwise go to home and family regardless of the  scientist's sex. Both articles suggest there is, in part, a biological  component in vocation choice of women and men. Both articles suggest  that vocation choice is at root the real reason women are under  represented in science-- to quote the AEI article quoting Hillary  Clinton, "women comprise 43% of the workforce but only 23% of scientists  and engineers". The AEI article points out that while women now occupy  the majority position in undergraduate and graduate schools and are the  majority of graduated Ph.D's, the majority of those Ph.D's are not in  "hard" science: physics, engineering, etc. Life sciences are grouped  outside of "hard" sciences-- something I don't understand. There's a lot  of physics in biochemistry.
The conclusion of the Current  Biology article is that we are not yet "at a stage where women have the  same opportunities as men to turn their passion for science into a  successful career". The conclusion of the AEI article is against using a  Title IX approach to science, saying "Will an academic science that is  quota-driven, gender-balanced, cooperative rather than competitive and  less time-consuming produce anything like [current] results?" 
I  suspect there is some gender bias in science. Overcoming such things  takes a generational time frame and not a political time frame. The  generation time of science is long with professors often teaching or  directing well into their seventies or eighties. This means if you have a  student that gets his Ph.D in 1973 (the year Christiane  Nüsslein-Volhard finished her thesis), with all of the sexism at the  time, it's highly likely the resulting professor will be running his own  lab or directing an institution thirty-five years later. Or, as is just  as likely, the student gets his Ph.D in 1959 at age 30, he'll be 79 in  2008. I know several researches at or around that age. 
This  means that for sexism to change in science it is not sufficient to wait  around for the previous generation to die off. Unlike politicians and  CEOs, scientists last. The scientific governing structure must change  itself.
Which it has. The AIE article points out that forty years ago that 23% number was 4%-- a six fold improvement. 
Are there biases against women in science? Absolutely, as demonstrated by the attitudes espoused by Larry Summers  when, as President of Harvard University, he suggested one reason for  the disparity between men and women in science was a difference in  intelligence. One can ask why the President of Harvard University might  think this was a wise and expedient thing to say regardless of whether  he believed it-- perhaps Summers is in the lower intelligence group. It  is interesting to note that both Summers and Nüsslein-Volhard have said  that intelligence is not the deciding factor.
For my own part, I expect there is a cognitive difference between men and women-- note I said cognition and not intelligence.  If you look at hunter-gatherer cultures there is a difference in roles.  If you look at chimps, there's a difference in roles. There's enough  selection in chimps to generate a difference in body size, for example.  It's unreasonable to expect that evolution of cognition isn't open to  natural selection as any other phenotypic trait.
It is interesting that when one examines the animal models of cognition-- chimps-- there's not much cognitive difference shown between males and females except a suggestion that females are smarter than males. But how significant could that be?
Regardless of the possibility of cognitive differences, and this is the important part so don't look away, they are not relevant to modern society. By "modern society" I mean when we left hunter gatherer cultures and moved to agriculture. Very few hunter gatherer qualities are useful today. Like all evolutionary systems, we've taken what we used for one purpose and reuse it in a new context. Therefore, any cognitive differences between men and women that arose a hundred thousand years ago are irrelevant in the society we live in now. Sure, women probably think differently than men. They've had different selection pressures put on them.
So what? Men and women today both have to solve completely new problems that have no connection to the problems those purported cognitive differences evolved to solve. The cognitive differences are just not relevant.
It is interesting that when one examines the animal models of cognition-- chimps-- there's not much cognitive difference shown between males and females except a suggestion that females are smarter than males. But how significant could that be?
Regardless of the possibility of cognitive differences, and this is the important part so don't look away, they are not relevant to modern society. By "modern society" I mean when we left hunter gatherer cultures and moved to agriculture. Very few hunter gatherer qualities are useful today. Like all evolutionary systems, we've taken what we used for one purpose and reuse it in a new context. Therefore, any cognitive differences between men and women that arose a hundred thousand years ago are irrelevant in the society we live in now. Sure, women probably think differently than men. They've had different selection pressures put on them.
So what? Men and women today both have to solve completely new problems that have no connection to the problems those purported cognitive differences evolved to solve. The cognitive differences are just not relevant.
Differences in bodies-- i.e., women bear and nurse children and men don't-- are more significant.
Though  the bias undoubtedly exists, I'm loathe to attack the issue in a  political way. Title IX has opened sports to a lot of girls-- an  unequivocally good thing. But by the Law of Unintended Consequences, it  also killed a lot of sports programs. For example, take a Big 10  University sports program that is required match sports funds with its  female students. Is it going to reduce the football program? Hm. Biggest revenue source for the University. Biggest draw for alumni donations. I don't think so.  Then, where's the money come from? It comes from lesser men's programs.  This isn't right or good but that's the way it is in the Land of the  Brave and the Home of the Free. Money talks. 
Not to mention in the Land of the Brave and the Home of the Free, where money talks, raising children is penalized since it does not directly create wages. As long as that's true we're going to have problems. Why not pay women (or families) to rear children? It is by far the most important job in the country. Yet we regularly penalize those that do it. The tax incentive method we now employ is embarrassingly inadequate.
But I digress.
Frankly, I don't care all  that much about sports programs. I think Americans are far too sports  conscious at the cost of academic programs. Not so about science. This  country has a love/hate relationship with science. We love science when  it's spiffy and neat and does good things for us. We hate  science when it comes up with things that poke at our preconceptions.  Note the issues with evolution and global warming. To inject forced  quotas into a system that is already beleaguered is likely a recipe for  disaster.
I have no clear answer at to any solution to  bias. Women bear and largely rear our children. It's unlikely we're able  to completely abandon our mammalian biology. Therefore, it's unlikely  we're ever going to have complete numerical parity in any professions.  There is always going to be a significant population of women that would  prefer to (or are forced to) engage in the rearing of their children  instead of attacking tough scientific problems. There are always going  to be fewer men than women that would have the same preference. I have  no idea where the percentages fall once all the other impediments are  handled but expecting 50/50 is probably unreasonable.
But if that's true, where's the end state of the problem? When will we reach it? If we do reach it, will we be able to tell? Legislation  and institutions outlive the purposes for which they were created. If  we create an institution to enforce "equality", will it be smart enough  to disassemble itself when the job is over? Few other institutions have  this ability, will this institution be any smarter? If we screw up a  generation or two of athletes, so what? But if we screw up a generation  or two of the cognitive elite, men and women, we're in hot water.
There are some generational problems that may just be better handled generationally.
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