My father was convinced that early exposure to music was important and from the time I was born (some time around the K-T boundary) he played classical music in the house. When I was very young-- perhaps three-- he bought me a small 78 rpm record player and a set of record albums. The story in the family is I would put on a record, sit and listen to it and then, when the record was over put the needle back on and listen to it again. Some years later I found those albums and the grooves had been worn off. They were flat as glass.
I've been playing music ever since. Think of me as a determined, gifted amateur-- except for the "gifted" part.
Music is basic to the human brain. Even severely demented patients, patients that have lost their ability to speak, to remember language, to recognized loved ones, can still react to music. Stroke victims that have lost the ability to speak can often regain that ability by learning to sing.
Some of it is basic physics. A440
is the standard tuning note against which other notes are tuned. Double
that frequency to 880 and we hear the same note higher in pitch. Cut it
in half and we have the same note lower in pitch. The interval between
frequency multiples can be divided into thirds, fourths and fifths. (See
here.) In the west we have divided the interval between one frequency and its double into the octave.
Other cultures divide it differently. However, all cultures recognize
the multiple. Most, but not all, recognize thirds, fourths and fifths.
But it's more than that.
Bruce Chatwin wrote a book (The Songlines) where he discussed some of the mythology of song in Australian aboriginal culture. Songlines are paths across the land taken by creator beings. Chatwin suggested that the songs were also navigational instruments. Pius Piailug was the navigator on the Hōkūleʻa on its long voyage to Tahiti. He used old methods of the islanders including watching stars and currents to find his way. There's a scene the documentary Papa Mau where he is shown teaching navigation to children. He teaches it in song. Its obvious why: we remember music much, much better than we remember almost anything else.
I believe music is more fundamental to our humanity than language. We sang before we spoke but probably not before we walked.
Okay, keep that in mind. Now we change subjects to evolutionary altruism.
Like
physics, there's a lot of unknowns in evolution. The big hole in
physics is gravity and the reconciliation of quantum physics and
relativity. One of the big hole in evolution is altruism. You can see the evidence of the conflict since E. O. Wilson and Richard Dawkins are fighting about it. (See here.)
Biological
altruism is fairly succinctly defined. It's the circumstance where a
reproductive entity decreases its own chances of reproduction (termed "fitness") to
increase the chances of another organism. A monkey giving a warning call
is putting himself at risk by announcing his position and decreasing
the risk to the rest of the troop.
But, in evolutionary terms, why would there be a selection of any organism to reduce its own fitness?
One
idea on the origin of altruism is kin selection. If you share food with
everybody, relatives and non-relatives alike, you put your gene pool at
risk. But if you share only with relatives then you are not only
propagating your own genes but that portion of your genetic heritage you
share with your relatives. In these circumstances altruism has a
positive reproductive benefit rather than another one. To bring it back
to the monkey, if your troop has a significant proportion of relatives,
the money benefits his larger shared gene pool at the risk of his
individual survival. That can be a win. There's a cost/benefit
proposition. As long as the cost (in genes) is less than the benefit
(genetic survival) then selection tends towards the behavior. If the C/B
shifts the other way, there's a selection against the behavior.
But kin selection falls apart when there's not a high enough relatedness in the group. One model is reciprocal altruism: I help you in the hopes that you'll help me later. Both of us benefit and our fitness is thereby increased. This falls shortly into group selection, which is what Dawkins and Wilson are fighting about. Group selection suggests there are circumstances where a particular gene or genes can spread throughout the population because of the benefit they bestow on the group as a whole independent of whether they give a benefit to a particular individual.
The problem of altruism in animals is one thing. In humans it's a different problem. We don't know directly if animals act altruistically but we know humans do. There are scores of actions humans take that actively reduce their reproductive fitness for no reproductive benefit. Think firemen. Think the military. These are often lumped into behavior that has a benefit for the individual: status, wealth, security. These benefits are supposed to increase the fitness of the individual. Yet, it doesn't take much examination at least in modern society to see that while these benefits may (or may not) benefit the individual reproductively. In terms of reproduction, volunteering to serve the country falls pretty short of sitting in front of the television eating Ho-Hos and squirting out babies. So it's not productive to do this in evolutionary terms.
Yet we do it all the time. We adopt children-- no reproductive advantage there. We adopt pets instead of children. We invest time, money, effort in saving starving children in Bangladesh. White people marched in Alabama for the rights of blacks. They marched specifically to increase their own competitive disadvantage.
We see around us all the time how people compete. Ingeniously. Duplicitously. Fairly. Viciously. The competitive mechanisms are obvious. It's easy to forget how fundamentally cooperative we are even when it doesn't do us much good to do so. The competitive mechanisms are all in light of what we normally thing of as Darwinian evolution-- "nature red in tooth and claw." But cooperation and altruism are just as important if not more so. We didn't manage to kill off the saber cats because we were the biggest badass on the grassland. We killed off the saber cats because we were better at working together than anything else, kin or not.
In music, you'll often see people who are part of completely different musical experiences play together. Somebody from Cameroon might play with somebody from Tibet. Or a South African singer might play with Chilean piper. Language barriers don't matter. Cultural barriers don't matter. They just play. This happens all the time. It happens so comfortably and easily we don't even consider it as odd. Why shouldn't they be able to play together? Maybe because it ought to be impossible?
After all, if two people can't speak together why should ever expect them to sing together?
But they do.
I like to imagine a Homo erectus band out there in Africa on a moonlit night singing together. Around a fire. The bonds of fellowship caused by that music strengthening them beyond mere family ties.
And the next morning, that band goes out and gets that damned saber cat.
Sunday, June 3, 2012
Thursday, May 24, 2012
Where It Comes From
I like to talk about science. however, Readercon is coming up and one of the panels I hope to be on is where you get your ideas. So this is my first stab at it.
First, I want to shift the concept of "ideas" to what I think is a better term, "material." In SF we tend to think of ideas as the basis of a story. Consider these three examples:
I think a writer brings everything he has to bear on a given story. Everything is material. Everything is material. The thoughts you had at your dead mother's funeral. The look of your puppy as it died in the street. The inappropriate thoughts you kept to yourself the first time you undressed at gym.
When I went to Clarion, Robin Scott Wilson said that writing was the only professions where you could drop your drawers, point to a big pimple on your butt and say look at that!
See? Everything is material.
So the problem with "ideas"-- or rather, material-- should be more what to leave out rather than what to put in. Material is everywhere. Looking at technology news today: "The Facebook Camera." Okay. Consider a world where every image is public. What does that mean? "Climate change allows once rare British butterfly to thrive." What is the state of Georgia going to do when the climate pushes animals currently living only in Florida north?
The point is not the material. The point is how you see the material.
Think of a black box. You want to know what's inside of it. What do you do? You pick it up. You feel its shape. You shake it. Stand it one one end and listen. Stand it on the other end and listen. What do you do when you get a new car? Take it out for a drive. Lean into the curves a bit. Check out the radio. What do you do when you get a new phone? Call somebody. Check the menus.
The first step of a writerly mind is to pick up a piece of material and examine it. Cuttlefish communicate by color. Interesting. How do they communicate? Flash pictures? Shapes? Maybe they use some sort of code.
The next step is sort of like how babies play with blocks. They fit them together and take them apart. They match them by color. By shape. By which ones fit with which other ones.
Back to the cuttlefish: What does a cuttlefish think about? Mating and eating probably. Do they play? Can a cuttlefish get bored? What does it mean for a cuttlefish to be bored-- what does it mean to play at all? If a cuttlefish was playing would we know it? Would we know it if it were bored? What would cuttlefish playing look like? Or cuttlefish boredom?
The writerly mind might try to answer these questions. Research is one answer-- put "bored cuttlefish" into Google and see what you get. Or you can imagine a bored cuttlefish. How? When I'm bored I might do something I know I like-- eat, maybe. Walk around. What would a cuttlefish do? Well, bored eating for a cuttlefish involves hunting. So it might go looking for a crab. That's a lot of work to alleviate boredom. The idea is to alleviate boredom without too much effort. Well, the cuttlefish has this color thing. Maybe it flashes at nothing-- doesn't sound satisfying, does it? Think like a cuttlefish. Hey! Look at this neat pattern. Where's Joe? Go find him. Hey, ,Joe! Check this out.
The idea is just there to catch interest. The material are the sticks from which you build the story. But what makes the story go is playing with the two.
First, I want to shift the concept of "ideas" to what I think is a better term, "material." In SF we tend to think of ideas as the basis of a story. Consider these three examples:
- A Fire Upon the Deep, Vernor Vinge: Computation gets more efficient as you proceed away from the galactic core enabling higher order functions
- Stranger in a Strange Land, Robert Heinlein: A human raised as a martian.
- A Canticle for Leibowitz, Walter M. Miller, Jr: After the apocalypse knowledge kept as part of a Catholic monastery
I think a writer brings everything he has to bear on a given story. Everything is material. Everything is material. The thoughts you had at your dead mother's funeral. The look of your puppy as it died in the street. The inappropriate thoughts you kept to yourself the first time you undressed at gym.
When I went to Clarion, Robin Scott Wilson said that writing was the only professions where you could drop your drawers, point to a big pimple on your butt and say look at that!
See? Everything is material.
So the problem with "ideas"-- or rather, material-- should be more what to leave out rather than what to put in. Material is everywhere. Looking at technology news today: "The Facebook Camera." Okay. Consider a world where every image is public. What does that mean? "Climate change allows once rare British butterfly to thrive." What is the state of Georgia going to do when the climate pushes animals currently living only in Florida north?
The point is not the material. The point is how you see the material.
Think of a black box. You want to know what's inside of it. What do you do? You pick it up. You feel its shape. You shake it. Stand it one one end and listen. Stand it on the other end and listen. What do you do when you get a new car? Take it out for a drive. Lean into the curves a bit. Check out the radio. What do you do when you get a new phone? Call somebody. Check the menus.
The first step of a writerly mind is to pick up a piece of material and examine it. Cuttlefish communicate by color. Interesting. How do they communicate? Flash pictures? Shapes? Maybe they use some sort of code.
The next step is sort of like how babies play with blocks. They fit them together and take them apart. They match them by color. By shape. By which ones fit with which other ones.
Back to the cuttlefish: What does a cuttlefish think about? Mating and eating probably. Do they play? Can a cuttlefish get bored? What does it mean for a cuttlefish to be bored-- what does it mean to play at all? If a cuttlefish was playing would we know it? Would we know it if it were bored? What would cuttlefish playing look like? Or cuttlefish boredom?
The writerly mind might try to answer these questions. Research is one answer-- put "bored cuttlefish" into Google and see what you get. Or you can imagine a bored cuttlefish. How? When I'm bored I might do something I know I like-- eat, maybe. Walk around. What would a cuttlefish do? Well, bored eating for a cuttlefish involves hunting. So it might go looking for a crab. That's a lot of work to alleviate boredom. The idea is to alleviate boredom without too much effort. Well, the cuttlefish has this color thing. Maybe it flashes at nothing-- doesn't sound satisfying, does it? Think like a cuttlefish. Hey! Look at this neat pattern. Where's Joe? Go find him. Hey, ,Joe! Check this out.
The idea is just there to catch interest. The material are the sticks from which you build the story. But what makes the story go is playing with the two.
Sunday, May 13, 2012
Evolution, Embryogenesis and Science Fiction
(Picture from here.)
Here's a very good article on the evolution of the animal developmental process. It's not so good at explaining plant embryogenesis (wikipedia article here.) If you followed the articles conclusions, plants would be a form of degenerate animals since they also have embryogenesis. I'm not going to go into it in this post but I suggest reading it.
My own suspicion is that the process of multicellular organization that led to the evolution of development probably predated either plants or animals. The organizational principles might have been in play (see Volvox for example) but the actual process of developing embryogenesis likely have evolved separately between the plants and animals. When I read about it I see little similarity other than the fact that both higher plants and animals have a definable pattern of developing adult organisms from dissimilar embryonic precursors.
The evolution of fungal life cycles and that of slime molds likely also have evolved separately. Fungi look like they have evolved from animals or at least an animal precursor. (See here.) There is some genetic evidence that the gilled mushrooms and puffball fruiting bodies may have evolved fairly recently and may also have arisen separately as many as four times. (See here.) What's less clear is how fruiting mechanisms of fungi evolved at all.
Slime molds (Myxomycetes) are interesting in that they have a single celled form and a multicelled form. When they mate they form a plasmodium, a large structure consisting of nuclei without any intervening cell membranes. The plasmodium then extends itself (and sometimes appears to actually move) by cytoplasmic stream and consumes the food source. When the food source wanes, it forms a fruiting body that looks mushroom like and develops spores.
These sorts of strategies are important in Science Fiction. SF aliens even in their most extreme form are usually animal in nature. There are a few exceptions: the living planet in Stanislaw Lem's Solaris. And the microbial gods of of Ken MacLeod's Engines of Light trilogy. SF Plant intelligences are essentially animals in plant suits. (See here.) Which is only marginally better than humans in alien suits.
It doesn't have to be that way.
I'm a big fan of using the strange and wonderful biological world of earth as inspiration for alien worlds. And, certainly, the animal kingdom is filled with the truly strange and completely non-human. But I'm also among the first to admit that this is animal chauvinism.
We have no idea of the shape of life on other worlds. I think we can suggest that if there are the ingredients and opportunity for a carbon based origin of life that life will in fact arise. And we can further speculate with evidence that the result will go as far as a similar metabolic path as earth's: using light to fix CO2 into carbon polymers and thereby releasing oxygen and metabolizing the resulting organic compounds in the presence of the resulting oxygen.Note the caveats: it says nothing about non-carbon life. We can't even say that life has to take a cellular path-- there are some very interesting experiments involving organic compounds unconstrained by chemical cells but constrained by physical components such as the cavities in lava rock. Or that individual cells are the preferred path. The slime mold plasmodium mentioned above is fairly large-- sometimes meters across-- and has no cell membraines. It is, in effect, a single cell.
We have no idea what things are like out there.We know only a little more about what things are right here.
The stories we want to tell are about human beings. Aliens are one wrench in the tool chest writers can use to tinker with the human experience and see how it works.This is, in my opinion, one of the distinctions between SF and fantasy. SF has at least the toe of one foot in the world we live in, the world of thermodynamics and the Cretaceous. Fantasy does not need that toe. In a fantasy world we can have creatures that pursue evil for no reason except they're evil. In the SF world, evil villains at least have to pursue evil because it makes them look cool. This is a technical evaluation not a judgement of quality. It's just a distinction. A work of fantasy does not have to conform to physics though it may choose to. A work of SF is informed by physics even if the physics are ignored.
I've been talking about biology for a bit now. My intention is not just to say Look at that! Isn't it cool? though that is certainly true. Instead, I'm saying that the biological world can serve as a tremendous well of metaphorical construction. Along with history, anthropology and archaeology, biology can help determine motivations, develop character and make stories.
Even with slime molds.
Saturday, May 5, 2012
Changing Human Paleobiology
(Picture from here.)
One of the things that changes over time is our perspective on our ancestors. It wasn't so long ago that we thought of Neanderthals as stupid, shambling brutes. Now we know they may have had brains that rivaled ours, speech and red hair. Our perspective of our ancient ancestors is also undergoing a revision.
Lucy is one of our earliest relatives. She's a representative of Australopithecus afarensis from about 3.2 million yers ago. Two years ago a new species of Australopithecus, A. sediba, was discovered also in Africa. A. sediba has a brain that is more organized like a human's than others.(See here.) She also has a tool maker's hand-- a hand much more capable of using tools than other members of her genus. However, she also has a foot that is more primitive than Lucy. (See here.) A. sediba is dated to about 2 million years ago.
Human beings belong to genus Homo. Home first appears with Homo habilis 2.33 to 1.8 million years ago.Which make one wonder if there was an overlap between the origin of Homo and the existence of A. sediba. It certainly makes the origin of genus Homo more interesting. Possibly, we'll discover another member of Australopithecus that will join the bipdal gait of Lucy with genus Homo.
The rhino in the room for this discussion is what traits are derived traits that humans inherited from non-human ancestors and what humans evolved on their own.Traits that we identify as hallmarks of our humanity include bipedal gate and the human brain. A. afarensis was fully bipedal but didn't have a human brain. A. sediba had, organizationally at least, something that might have evolved into a human brain but didn't have a human foot to back it up.
Adding to that is a recent find of another Australopithecus, a contemporary of Lucy, that had more of a tree dwelling foot than Lucy did. (See here.)
Questions about. Did Lucy or another Lucy-like relative serve as the ancestor of Homo habilis and the brain organization derive separately from A. sediba? Or did A. sediba, or something like her, serve as an ancestor to Homo habilis and the foot derive separately? Or, is there a third Australopithecus species waiting to be found?
What we've been calling late derived traits are being pushed back all the time. Baboons had been shown to be able to distinguish gibberish from actual words-- an astonishing feat for a species that doesn't talk. (See here also.) Clearly, they are not determining this by the meaning of the words. Instead, they must be using some sort of statistical mechanism to detect patterns. Humans probably do the same thing. However, the lineage from which humans arose split from the baboon line thirty million years ago. Baboons
My point is the the dividing line between what an ancient genus Homo and an ancient genus Australopithecus may not have been all that great.
A new study that came out in the last few weeks looks at the number of large predators over time. These days there are only a few predators over 70 kg. But as recently as three million years ago there were many more. About two million years ago the number of large predators crashed. The study ruled out climate change or other more typical "natural" disasters. But it couldn't rule out that humans, or equivalents, might have done it.
The granularity of the time domain is broad-- 500k years. Which is problematic since if the actual date moves one way or the other genus Homo might not be responsible. If it's too early, Homo wasn't around to do the job. If it's too late then Homo was around for quite a while without making any impact.
But as I read the article, I kept remembering A. sediba. Baboons. Chimps. And all the other animals we've arrogantly claimed couldn't use tools, communicate or think.
If humans didn't do the deed there might still be other candidates.
Thursday, April 26, 2012
Higgs Boson and the LHC
PhD Comics has a quick tutorial movie on the Higgs Boson here. It's very good and explains a great deal.
I do quibble with one comment in the film. The narrator says there cannot be repulsive gravity. Some models (notably relativistic models) actually predict repulsive gravity as a product of negative mass. (See here. A good discussion of gravitational interaction with anti-matter is here.) The Standard Model doesn't have negative gravitons. But there are some models of dark matter that suggest it.
I do quibble with one comment in the film. The narrator says there cannot be repulsive gravity. Some models (notably relativistic models) actually predict repulsive gravity as a product of negative mass. (See here. A good discussion of gravitational interaction with anti-matter is here.) The Standard Model doesn't have negative gravitons. But there are some models of dark matter that suggest it.
Monday, April 23, 2012
Harry Potter, Revisited
A few years ago I wrote this Harry Potter story.
Voldemort stole into Harry's room, invisible. He paused to make sure the boy was sleeping. Carefully, he deposited his gift, Introduction to Nuclear Physics, complete with a note "From a Friend." He left immediately he had miles to go before dawn.
He saw the flash all the way from London.
I find the Harry Potter stories fundamentally uninteresting except for enjoying spectacle-- which the movies provide nicely.
Enter Eliezer Yudkowsky and her fanfic in progress: Harry Potter and the Methods of Rationality.
I have not finished this yet but I am enjoying it hugely. Go thou and do likewise.
Monday, April 9, 2012
Neurology of Molluscs
Quick follow up on Neurozoans. This is a brief discussion on the neurology of molluscs. It didn't fit with the larger discussion but I thought it was interesting.
There are seven rough groups within molluscs-- I say "rough" because there's a lot of discussion over who belongs with whom. (See here.) These are:
- Bivalvia: scallops and the like
- Monoplacophora: limpet like shelled molluscs
- Gastropoda: snails/slugs
- Cephalopoda: squids and their relatives
- Scaphopoda: tusk shells
- Aplacophora: worm like animals
- Polyplacophora: chitons
Bivalves don't have a CNS. Neither do monoplacophora. Gastropoda and Scaphopoda have similar central nervous systems in that they have ganglia that interconnect. These are not usually considered a brain as such though some complexity can be achieved. Aplacophora look simpler than snails in that they have a cerebral ganglion but it's not terribly complex. Polyplacophora (chitons) have no true ganglia but there is a ring of neural tissue around the esophagus. The Cephalopoda have highly developed brains.
Are bivalves the primitive state and the other two classes evolved brains on their own? Or did the primitive mollusc have a brain and lost it in bivalves?
Mollusc clades suggest the that there are two great divisions within the mollusc phylum. One side leads to both bivalves and cephalopods. The other leads to chitons and Aplacophora. Neither chitons or aplacophorans have brains but they do have central ganglia. Over on the other side while bivalves don't have any CNS, gastropods, cephalopods and scaphopods do. Since both sides of the same phyla have at least central ganglia, we can presume that the primitive ancestor of molluscs had one, too, and that bivalves lost theirs.
This is supported by a paper in 2001 by Reichert and Simeone. By analyzing small rRNA sequences, they were able to redraw phylogenetic relationships between phyla and push back the origin of the central nervous system to the very first bilaterally symmetric animals. They further speculate that the original ur-bilateral animal might have had significantly complex brains and that subsequent simplifications of the brain (such as in clams) is just the complexity of the brain degenerating.
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