Monday, July 12, 2010

About "The Birds of Isla Mujeres"


The Birds of Isla Mujeres goes up today over at Book View Cafe.

The story is another take on the Frankenstein mythos-- the results of humans creating life. But it was the first story where I started playing with a loose connection between the technology of the story and the story itself.

I was involved with a woman at the time and we were going through a bad time. Things were going to get much worse before we split apart entirely but at the time I didn't know that. To try and patch things up we took a short vacation. To Mexico.

We stared at Cancun. Went on to Merida-- which is a very cool place by the way-- and whiled away the last few days before the return on Isla Mujeres.

At the time, Isla Mujeres was a cross between native Mexicans and ex-pat Americans. Several of the homes had walls around them studded with broken glass at the time. I'd seen that elsewhere in Mexico. It was open to the sea on the east side and the mainland was visible to the east. At night the lights of Cancun were visible but the island was mostly dark.

The ferry brought us to the piers of the island and the first thing I saw were the frigatebirds, flying high above us, like black swatches cut from the sky.

In those days I always carried a typewriter with me and worked on this while we were working, unsuccessfully, to salvage something from each other.

An end to romance, I thought. And the story was off and running.

Sunday, July 11, 2010

Evolving Complexity



One of the more interesting problems in evolution is how we went from single celled organisms to multicellular organisms.

It's an interesting dilemma. After all, one celled organisms are perfectly fine. They evolve well. They manage to be the largest biomass on the planet. Why did some individuals decide to give up their autonomy to join together?

Remember, evolution is always working. Therefore, there had to be an advantageous reason for these organisms to band together. The problem is, of course, that the non-reproductive cells in an organism give up their reproductive rights-- which seems counter-intuitive for a single celled organism to do.

Sergey Gavrilets has published a mathematical model in PLoS of how such a differentiation can occur. He used as his model the algae Volvox, a primitive colonial algae. He concentrated on two genes, one for viability and one for fertility. Viability (v) was considered to be contribution towards survival of the colony and fertility (f) was defined to be the ability to found a new colony.

Since single cells found colonies all the time and still retain their individuality, we can use this as a starting point. Both v and f contribute to the proliferation of colonies but neither can be maximized at the same time. In his model individual selection favors larger values of f and colony level selection favors larger values of v. Mutation can affect the value of f or v. For individuals with mutations favoring f in the individual cell, the viability of the colony is decreased. Similarly, individuals with mutations favoring v cause a loss of colony fertility.

Volvox has a division of labor between two cell types: germ and soma, i.e., reproduction and the colony operation. The differentiation between the two is regulated by three types of genes and has an environmental factor. Gavrilets posulated similar genetic processes in his model such that the f and v values could be suppressed or initiated with respect to one another. He was able to control the regulation processes and see the results.

The coupling of the f and v regulation resulted fairly quickly (about 1 million generations) in a germ/soma differentiation very similar to Volvox. That is, the germ cells were the only ones that reproduced and the soma cells were exclusively producing material for colony consumption. Depending on the degree of f and v coupling he could create populations of varying differentiation. The degree of differentiation reflected a range of plasticity, the ability of a germ or soma cell to do the other type's job. Plasticity directly reflect the fitness cost. If that cost was high, germ/soma differentiation proceeded to full differentiation. If that cost was low, the differentiation remained limited or perhaps non-existent.

What's interesting here is that these are particularly simple numerical models. What is necessary is the coupling of only two traits (f and v) and selection towards a particular outcome. The question of where multicullular organisms came from gets turned on its head: why aren't all organisms multicellular.

Hazarding a guess, I would think that there are two areas where single celled organisms might not evolve into multicellular organisms. One is where there is no real coupling between fertility and viability. Bacteria organize quite well into colonies. However, the viability of the colony doesn't have to have a negative effect on the ability of individuals to colonize.

The other is the cost of plasticity. If there's a high cost to retaining plasticity (possibly as a result of the coupling of f and v) then, like anything else in evolution, plasticity is jettisoned. However, if there is a positive attribute to plasticity than it would be retained. One can see that plasticity is highly advantageous in many single celled animals. Thus, multicellular systems can evolve easily when the circumstances are right-- which they can often be-- but won't evolve from organisms which don't have the right repertoire.

Original article here.

Friday, July 9, 2010

Readercon 2010

I'll be at Readercon again this year-- as I am, pretty much, every year. I only have one panel at 6:00 PM Friday night. The panel is on global warming and science fiction.

Or, as I'm starting to call it: Global Warming vs. Science Fiction. Threat or Menace? Cozy Spooning or Celebrity Death Match?

I'll post my notes about it afterwards.

Thursday, July 8, 2010

The Broken Brain



About two years ago my son, Ben, fell backwards at school and hit his head. He went to the doctor. The doctor thought he had a concussion and we kept him home.

Ben was dizzy. He had trouble walking. We went through a lot of emotional trauma before he started to recover.

Ben was a competitive gymnast at that time. He was out of gymnastics for over two months. When he was getting ready to return he practiced some-- Ben was unable to do a handstand without falling over. He believed he was handstanding perfectly straight when he was at actually handstanding at quite an angle. Clearly, there had been damage. Just as clearly, over time, he recovered.

My Master's degree is in neurophysiology so I have perhaps a better acquaintance than most with the brain's complexity. I'm not going to go deeply into the trauma we went through-- what I consider some fairly serious mis-diagnosis by the specialist we went to. But I use it to illustrate a point: traumatic brain injury is not trivial.

So it is with some happiness that I direct the reader of this blog to some very interesting data and a new possible treatment for such injuries in this article.

Ben recovered completely both the normal actions and cognition of his age along with his gymnastics ability. He has since left gymnastics and pursues judo where he looks forward to cleaning his old man's clock.

His old man is very proud.

======================
Links of Interest
Ancestor of squid found
Causes of the Great Recession
Fuel from Microbes
Infection blamed for bee's decline
Brain size changes in locust swarming
Humans in Separate Groups Prior to Diaspora
Neandertals Speak
Last Common Ancestor of Neandertals and Humans
The Age of Upright Walking
Single Main Migration across Bering Strait


Ancestor of squid found
Causes of the Great Recession
Fuel from Microbes
Infection blamed for bee's decline
Brain size changes in locust swarming
Humans in Separate Groups Prior to Diaspora
Neandertals Speak
Last Common Ancestor of Neandertals and Humans
The Age of Upright Walking
Single Main Migration across Bering Strait

Wednesday, July 7, 2010

News from Book View Cafe



Book View Café publishes Dolley’s Bizarre True Crime Story

Book View Café (BVC) is pleased to announce the publication of FRENCH FRIED, an unfortunately true account of English author Chris Dolley’s harrowing first eight months in France. The book has been described as ‘A Year in Provence with Miss Marple and Gerald Durrell.’

Upon surviving a difficult move to a foreign country, Dolley and wife discover their life savings and Dolley’s identity have been stolen. Adding insult to injury, the authorities have no time for his problem so with the “help” of an 80 year-old mother-in-law, Dolley tracks the criminals himself through the bureaucracies of France, Spain, Ireland, and Great Britain. FRENCH FRIED is an account of the author’s hilarious, yet frightening journey through a nightmare of international crime.

Read Chapter One of FRENCH FRIED for free here.

Purchase the ebook here.

Friday, July 2, 2010

Bits and Pieces


A couple of new things came across my desk that are worth pointing out.

David Eller wrote a nice feature article analyzing Intelligent Design Creationism. He didn't bother to just attack it but to analyze it on its own terms. ID doesn't do well. See here.

Andrew J Bacevich wrote an interesting article on the problems in the civilian control of the military undergoing a long term war. McChrystal is just the canary in the coal mine. See here.

Look here for a preview of The Empire Strikes Back, made in 1950. This is a new genre called "pre-makes:" trailers for modern films that owe their roots to older movies made to resemble the old movies they were made from. More here and here.

There's been a lot of talk about "Obama's" deficit. Here's a quick article showing how much of it he inherited.

Paul Dirac's beautiful article from the May 1963 Scientific American. Back when men were men and commies were nervous.

What to do with glass things here.

Know how to glue anything to anything else here.

Terrific ocean videos here and here.

And, finally, possibly the saddest NYT story I've ever read: Tuna's End.

Thursday, July 1, 2010

Change I Believe In




I haven't been blogging as much lately.

This is for a couple of reasons. One is that I've been finishing the first draft of my current novel and some other projects. This leaves little time for blogging. I have a rule: energy for blogging must not come from energy dedicated to writing. I can't put myself into the position of substituting something that is fun but not all that important to me for something that is much harder but more rewarding.

Writing the longer essays is a lot of work. My life is a zero sum game and time and energy that is spent on essays has to come from somewhere. It can't come from writing. It can't come from my job. And I won't let it rob me of time with my family. What's left is precious little.

So I have to think of better ways.

I do a fairly long essay every couple of weeks for the BVC blog and I cross post that here. That, for reasons that are obscure to me, have been largely about evolution. That covers a bit. I've been considering shorter, more frequent entries. We'll see how that works.

Another reason has been outright depression about some things.

Over the last couple of years I've been blogging fairly regularly about political and public foolishness. But over the last year the foolishness has gone from being humorous to being annoying, from being annoying to pissing me off and from pissing me off to outright malignancy. There are people in the political and social sphere that have made it their business and avocation to create a social cancer in this country. Jay Severin has gone so far as to talk about Obama being a communist and advocating impeachment. Newt Gingrich has written a bout about Obama's "secular socialist agenda". Anne Coulter-- well, the less said about her the better. Then, there's the Texas school board. The list goes on and on.

The left isn't a lot better.

Since nothing I say here is going to actually effect any change I've decided not to dwell on it here.

Which leads me to wonder what I want to say here.

Hence the lower output.

I do think I want to talk about science, making objects and drawing attention to wonderful things.

So: stay tuned. We'll see what I come up with.